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Funded Research

Detection of key leaf physiological traits using spectroscopy and hyperspectral imagery

Townsend, Philip (Phil): University of Wisconsin (Project Lead)

Project Funding: 2010 - 2012

NRA: 2009 NASA: HyspIRI Preparatory Activities Using Existing Imagery   

Funded by NASA

Abstract:
Spectroscopic approaches are effective for detecting important biochemical traits of leaves, such as nitrogen and lignin concentration. At present, we are using imaging spectroscopy to characterize key forest functional traits including leaf structure (essentially cell volume), shade tolerance (~ratio of chlorophyll content to leaf volume) and recalcitrance (lignin concentration). In a new pilot study, we have tested the capacity of green-leaf spectroscopy to measure other important physiological traits needed to estimate canopy photosynthesis and respiration following the Farquhar model. Because metabolic rates vary with foliar nitrogen and ambient temperature, our initial studies have been conducted experimentally on aspen and cottonwood trees under three temperature regimes and two N fertilization scenarios. Using interval-PLS, we have found strong relationships (R^2 > 0.68) between green leaf spectra and: (a) warm leaf respiration rate (normalized to 23C), (b) cold leaf respiration rate (13C), (c) CO2 assimilation rate (on an area and mass basis), (d) specific leaf area, (e) leaf nitrogen, (f) maximum rate of carboxylation, V(c)max, and (g) maximum rate of electron transport, Jmax. Further, evaluation of spectral loadings indicate that the wavelengths important to prediction correspond to known sensitivities within spectral data, e.g. wavebands related to N, water, and chlorophyll content, and structural characteristics of the spongy mesophyll. We propose to test the potential for extending our spectroscopic measurements to hyperspectral imaging. Using existing AVIRIS and Hyperion imagery with our field data and the SAILH radiative transfer model, we will demonstrate the scaling of these variables to the canopy for aspen forests in the Lake States. In addition, we will employ thermal imagery in conjunction with surface temperature data to estimate leaf temperatures that are critical to regulating metabolic rates.  This effort will greatly enhance our ability to use anticipated HyspIRI data to concurrently map key variables associated with photosynthesis in forests.

Publications:

Ainsworth, E. A., Serbin, S. P., Skoneczka, J. A., Townsend, P. A. 2013. Using leaf optical properties to detect ozone effects on foliar biochemistry. Photosynthesis Research. 119(1-2), 65-76. DOI: 10.1007/s11120-013-9837-y

Cotrozzi, L., Townsend, P. A., Pellegrini, E., Nali, C., Couture, J. J. 2017. Reflectance spectroscopy: a novel approach to better understand and monitor the impact of air pollution on Mediterranean plants. Environmental Science and Pollution Research. 25(9), 8249-8267. DOI: 10.1007/s11356-017-9568-2

Couture, J. J., Serbin, S. P., Townsend, P. A. 2013. Spectroscopic sensitivity of real-time, rapidly induced phytochemical change in response to damage. New Phytologist. 198(1), 311-319. DOI: 10.1111/nph.12159

Couture, J. J., Singh, A., Rubert-Nason, K. F., Serbin, S. P., Lindroth, R. L., Townsend, P. A. 2016. Spectroscopic determination of ecologically relevant plant secondary metabolites. Methods in Ecology and Evolution. 7(11), 1402-1412. DOI: 10.1111/2041-210x.12596

Smith, N. G., Keenan, T. F., Colin Prentice, I., Wang, H., Wright, I. J., Niinemets, U., Crous, K. Y., Domingues, T. F., Guerrieri, R., Yoko Ishida, F., Kattge, J., Kruger, E. L., Maire, V., Rogers, A., Serbin, S. P., Tarvainen, L., Togashi, H. F., Townsend, P. A., Wang, M., Weerasinghe, L. K., Zhou, S. 2019. Global photosynthetic capacity is optimized to the environment. Ecology Letters. 22(3), 506-517. DOI: 10.1111/ele.13210


2011 NASA Carbon Cycle & Ecosystems Joint Science Workshop Poster(s)

  • Empirical Basis for the Measurement of Plant Metabolic and Functional Status using HyspIRI   --   (Shawn Paul Serbin, Eric L Kruger, Aditya Singh, Philip A Townsend)   [abstract]

More details may be found in the following project profile(s):